API reference

• tfcomb.objects module
  • CombObj
  • DiffCombObj
  • DistObj
• tfcomb.network module
  • build_network()
  • get_degree()
  • get_betweenness_centrality()
  • subset_graph()
  • cluster_louvain()
  • cluster_blockmodel()
  • get_node_table()
  • get_edge_table()
  • create_random_network()
  • plot_powerlaw()
• tfcomb.analysis module
  • orientation()
  • OrientationAnalysis
• tfcomb.annotation module
  • annotate_regions()
  • get_annotated_genes()
  • GOAnalysis
• tfcomb.plotting module
  • bubble()
  • heatmap()
  • scatter()
  • go_bubble()
  • network()
  • genome_view()
• tfcomb.utils module
  • OneTFBS
  • TFBSPair
  • TFBSPairList
  • InputError
  • StopExecution
  • check_graphtool()
  • check_module()
  • check_columns()
  • check_dir()
  • check_writeability()
  • check_type()
  • check_string()
  • check_value()
  • random_string()
  • Progress
  • log_progress()
  • prepare_motifs()
  • open_genome()
  • open_bigwig()
  • check_boundaries()
  • unique_region_names()
  • calculate_TFBS()
  • resolve_overlaps()
  • add_region_overlap()
  • shuffle_array()
  • shuffle_sites()
  • calculate_background()
  • get_threshold()
  • is_symmetric()
  • make_symmetric()
  • set_contrast()
  • analyze_signal_chunks()
  • evaluate_noise_chunks()
  • getAllAttr()